PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462880850
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 168aa    MW: 18512 Da    PI: 9.4487
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462880850genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B369.54.6e-2226843390
               -SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
         B3 33 sktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90
               ++ l +ed +g++W+++++y+++s++yvltkGW++Fv+++gL++gD++vF+++    e+
  462880850 26 GVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLRAGDTIVFSHSTYgPEK 84
               567999*********************************************87554444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010192.5E-41293IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-232299IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-192591IPR015300DNA-binding pseudobarrel domain
PfamPF023625.0E-192679IPR003340B3 DNA binding domain
PROSITE profilePS5086311.9422994IPR003340B3 DNA binding domain
CDDcd100173.92E-183178No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MSPTAVDYSS SASTATTESG AAQLPGVLLN FEDGEGKVWR FRYSYWNSSQ SYVLTKGWSR  60
FVREKGLRAG DTIVFSHSTY GPEKQLFIDC KKNKSTPAAT DAAPSPSPME KPKDQAHVVV  120
RLFGVDIARD GCQKRGRPIE IALEQGQQFL KKQCMAQHHT PALGAFLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-29199144115DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0650089e-76AK065008.1 Oryza sativa Japonica Group cDNA clone:J013001E21, full insert sequence.
GenBankAP0029139e-76AP002913.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0480E02.
GenBankAP0149579e-76AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCT8288869e-76CT828886.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA058B11, full insert sequence.
GenBankCU4062719e-76CU406271.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C113A09, full insert sequence.
GenBankCU4064519e-76CU406451.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C110I16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968155.11e-75PREDICTED: AP2/ERF and B3 domain-containing protein Os01g0141000-like
SwissprotQ0DXB15e-59Y2641_ORYSJ; B3 domain-containing protein Os02g0764100
SwissprotQ9AWS02e-57Y1410_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0141000
TrEMBLK3XJ361e-75K3XJ36_SETIT; Uncharacterized protein
STRINGSi001909m4e-75(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.28e-33related to ABI3/VP1 2